A4A49_01274

Description : nuclear poly(a) polymerase 4

Gene families : OG_42_0001415 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001415_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Nicotiana release: A4A49_01274
Cluster	HCCA clusters: Cluster_99

Target	Alias	Description	ECC score	Gene Family Method
At4g32850	No alias	nuclear poly(a) polymerase [Source:TAIR;Acc:AT4G32850]	0.03	Orthogroups_2024-Update
Glyma.07G015000	No alias	nuclear poly(a) polymerase	0.04	Orthogroups_2024-Update
Glyma.08G200500	No alias	poly(A) polymerase 2	0.04	Orthogroups_2024-Update
Kfl00261_0030	kfl00261_0030_v1.1	(at4g32850 : 625.0) Encodes a nuclear poly(A)...	0.02	Orthogroups_2024-Update
MA_27451g0010	No alias	(at1g17980 : 495.0) Encodes a poly(A) polymerase....	0.03	Orthogroups_2024-Update
PSME_00026682-RA	No alias	(at4g32850 : 749.0) Encodes a nuclear poly(A)...	0.03	Orthogroups_2024-Update
Potri.015G043200	No alias	poly(A) polymerase 1	0.03	Orthogroups_2024-Update
Seita.2G416900.1	No alias	poly(A) RNA polymerase	0.03	Orthogroups_2024-Update
Sopen12g031790	No alias	Poly(A) polymerase central domain	0.03	Orthogroups_2024-Update
evm.model.tig00000037.23	No alias	(at1g17980 : 181.0) Encodes a poly(A) polymerase....	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	InterProScan predictions
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004652	polynucleotide adenylyltransferase activity	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016779	nucleotidyltransferase activity	IEA	InterProScan predictions
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043631	RNA polyadenylation	IEA	InterProScan predictions
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
MF	GO:0070566	adenylyltransferase activity	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR007010	PolA_pol_RNA-bd_dom	364	422
IPR007012	PolA_pol_cen_dom	17	361
IPR002934	Polymerase_NTP_transf_dom	87	166

External Links

No external refs found!

A4A49_01274

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation