Description : Reverse transcriptase (RNA-dependent DNA polymerase)
Gene families : OG_42_0001735 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001735_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Solanum release: Sopen10g025560 | |
Cluster | HCCA clusters: Cluster_40 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
Sopen12g024480 | No alias | Reverse transcriptase (RNA-dependent DNA polymerase) | 0.03 | Orthogroups_2024-Update | |
evm.model.contig_2026.2 | No alias | no hits & (original description: no original description) | 0.02 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003676 | nucleic acid binding | IEA | InterProScan predictions |
MF | GO:0008270 | zinc ion binding | IEA | InterProScan predictions |
BP | GO:0015074 | DNA integration | IEA | InterProScan predictions |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No Predicted GO terms available for this sequence |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR025724 | GAG-pre-integrase_dom | 1753 | 1792 |
IPR025724 | GAG-pre-integrase_dom | 453 | 492 |
IPR013103 | RVT_2 | 2127 | 2367 |
IPR013103 | RVT_2 | 827 | 1067 |
IPR001584 | Integrase_cat-core | 1806 | 1921 |
IPR001584 | Integrase_cat-core | 506 | 621 |
IPR001878 | Znf_CCHC | 1565 | 1579 |
IPR001878 | Znf_CCHC | 265 | 279 |
No external refs found! |