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  5. A4A49_03849

A4A49_03849


Description : protein chromatin remodeling 4


Gene families : OG_42_0000148 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000148_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Nicotiana release: A4A49_03849
Cluster HCCA clusters: Cluster_9

Target Alias Description ECC score Gene Family Method Actions
130534 No alias chromatin remodeling 4 0.03 Orthogroups_2024-Update
At2g25170 No alias chromatin remodeling factor CHD3 (PICKLE)... 0.03 Orthogroups_2024-Update
At3g06400 No alias Chromatin-remodeling complex ATPase... 0.04 Orthogroups_2024-Update
Bradi1g10360 No alias chromatin remodeling 1 0.03 Orthogroups_2024-Update
Brara.I01861.1 No alias CHD3-type chromatin remodeling factor *(PKL/PKR) 0.03 Orthogroups_2024-Update
Cre12.g537671 No alias chromatin remodeling 4 0.03 Orthogroups_2024-Update
GRMZM2G097289 No alias Homeotic gene regulator 0.02 Orthogroups_2024-Update
Glyma.01G175300 No alias chromatin remodeling 1 0.04 Orthogroups_2024-Update
Glyma.13G215900 No alias chromatin-remodeling protein 11 0.03 Orthogroups_2024-Update
LOC_Os01g65850 No alias CHD3-type chromatin-remodeling factor PICKLE, putative, expressed 0.03 Orthogroups_2024-Update
PSME_00001593-RA No alias (at2g13370 : 1311.0) chromatin remodeling 5 (CHR5);... 0.04 Orthogroups_2024-Update
PSME_00006567-RA No alias (at5g44800 : 1157.0) chromatin remodeling 4 (CHR4);... 0.03 Orthogroups_2024-Update
Potri.008G205600 No alias chromatin remodeling factor17 0.02 Orthogroups_2024-Update
Potri.010G019800 No alias chromatin-remodeling protein 11 0.02 Orthogroups_2024-Update
Sobic.009G040600.1 No alias SMARCA component *(SYD/BRM/MINU) 0.03 Orthogroups_2024-Update
evm.model.tig00000217.24 No alias (at2g28290 : 140.0) Encodes a SWI2/SNF2-like protein in... 0.01 Orthogroups_2024-Update
evm.model.tig00020960.24 No alias (at2g13370 : 202.0) chromatin remodeling 5 (CHR5);... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR000330 SNF2_N 805 1084
IPR001650 Helicase_C 1109 1221
IPR019787 Znf_PHD-finger 93 136
IPR009463 DUF1087 1397 1438
IPR023780 Chromo_domain 699 749
IPR023780 Chromo_domain 642 682
No external refs found!