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  5. A4A49_04568

A4A49_04568


Description : polygalacturonase-2


Gene families : OG_42_0000306 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000306_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Nicotiana release: A4A49_04568
Cluster HCCA clusters: Cluster_65

Target Alias Description ECC score Gene Family Method Actions
A4A49_21681 No alias putative polygalacturonase 0.04 Orthogroups_2024-Update
At3g07970 No alias Polygalacturonase QRT2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SFB7] 0.03 Orthogroups_2024-Update
Bradi2g18030 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
Brara.C03581.1 No alias EC_3.2 glycosylase 0.03 Orthogroups_2024-Update
Glyma.09G224800 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.14G044200 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.15G275400 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.18G139802 No alias Pectin lyase-like superfamily protein 0.02 Orthogroups_2024-Update
LOC_Os05g46510 No alias polygalacturonase, putative, expressed 0.03 Orthogroups_2024-Update
MA_63122g0010 No alias (at1g23460 : 261.0) Pectin lyase-like superfamily... 0.02 Orthogroups_2024-Update
PSME_00006809-RA No alias (at1g23460 : 407.0) Pectin lyase-like superfamily... 0.02 Orthogroups_2024-Update
PSME_00023335-RA No alias (at1g80170 : 293.0) Pectin lyase-like superfamily... 0.03 Orthogroups_2024-Update
PSME_00025694-RA No alias (at1g80170 : 422.0) Pectin lyase-like superfamily... 0.02 Orthogroups_2024-Update
Potri.006G252900 No alias Pectin lyase-like superfamily protein 0.04 Orthogroups_2024-Update
Seita.2G346300.1 No alias EC_3.2 glycosylase 0.03 Orthogroups_2024-Update
Seita.3G162000.1 No alias EC_3.2 glycosylase 0.02 Orthogroups_2024-Update
Sobic.006G178900.1 No alias EC_3.2 glycosylase 0.03 Orthogroups_2024-Update
Sopen12g004420 No alias Glycosyl hydrolases family 28 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEA InterProScan predictions
BP GO:0005975 carbohydrate metabolic process IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR000743 Glyco_hydro_28 109 437
No external refs found!