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  5. A4A49_04775

A4A49_04775


Description : putative e3 ubiquitin ligase sud1


Gene families : OG_42_0000004 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Nicotiana release: A4A49_04775
Cluster HCCA clusters: Cluster_26

Target Alias Description ECC score Gene Family Method Actions
At1g42190 No alias GAG/POL/ENV polyprotein [Source:UniProtKB/TrEMBL;Acc:Q9C763] 0.03 Orthogroups_2024-Update
HORVU0Hr1G014810.2 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU0Hr1G039350.2 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU6Hr1G002090.1 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU6Hr1G084730.1 No alias Unknown function 0.03 Orthogroups_2024-Update
LOC_Os04g51430 No alias retrotransposon protein, putative, unclassified, expressed 0.03 Orthogroups_2024-Update
LOC_Os10g28930 No alias retrotransposon protein, putative, Ty3-gypsy subclass, expressed 0.03 Orthogroups_2024-Update
Sopen04g017770 No alias Integrase core domain 0.02 Orthogroups_2024-Update
Sopen08g006680 No alias Integrase core domain 0.02 Orthogroups_2024-Update
Sopen10g020660 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen11g023740 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR011016 Znf_RING-CH 48 93
No external refs found!