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  5. A4A49_05437

A4A49_05437


Description : chd3-type chromatin-remodeling factor pickle


Gene families : OG_42_0000148 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000148_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Nicotiana release: A4A49_05437
Cluster HCCA clusters: Cluster_9

Target Alias Description ECC score Gene Family Method Actions
Glyma.07G250700 No alias chromatin remodeling factor17 0.05 Orthogroups_2024-Update
MA_77097g0010 No alias (at3g06010 : 290.0) Encodes AtCHR12, a SNF2/Brahma-type... 0.03 Orthogroups_2024-Update
Pp1s47_44V6 No alias chromatin remodeling complex subunit 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR009462 DUF1086 951 1082
IPR023780 Chromo_domain 117 171
IPR023780 Chromo_domain 208 256
IPR012957 CHD_C2 1095 1128
IPR019787 Znf_PHD-finger 69 111
IPR001650 Helicase_C 620 733
IPR009463 DUF1087 856 916
IPR000330 SNF2_N 318 598
No external refs found!