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  5. A4A49_06608

A4A49_06608


Description : rna polymerase sigma factor siga


Gene families : OG_42_0005642 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0005642_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Nicotiana release: A4A49_06608
Cluster HCCA clusters: Cluster_30

Target Alias Description ECC score Gene Family Method Actions
At1g64860 No alias RNA polymerase sigma factor sigA... 0.03 Orthogroups_2024-Update
Bradi2g09966 No alias Function unknown 0.03 Orthogroups_2024-Update
GRMZM2G543629 No alias sigma factor A 0.04 Orthogroups_2024-Update
Potri.019G043300 No alias sigma factor A 0.03 Orthogroups_2024-Update
Solyc06g072710 No alias Sigma factor (AHRD V3.3 *** Q9SLX3_TOBAC) 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEA InterProScan predictions
BP GO:0006352 DNA-templated transcription, initiation IEA InterProScan predictions
BP GO:0006355 regulation of transcription, DNA-templated IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR007627 RNA_pol_sigma70_r2 267 334
IPR007630 RNA_pol_sigma70_r4 441 490
IPR007624 RNA_pol_sigma70_r3 344 415
No external refs found!