Sopen10g028580

Description : RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)

Gene families : OG_42_0000513 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000513_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Sopen10g028580
Cluster	HCCA clusters: Cluster_46

Target	Alias	Description	ECC score	Gene Family Method
At5g32450	No alias	Putative RRM-containing protein...	0.02	Orthogroups_2024-Update
Brara.K00493.1	No alias	Unknown function	0.03	Orthogroups_2024-Update
GRMZM2G102808	No alias	RNA-binding (RRM/RBD/RNP motifs) family protein	0.02	Orthogroups_2024-Update
GRMZM2G165298	No alias	RNA-binding (RRM/RBD/RNP motifs) family protein	0.02	Orthogroups_2024-Update
LOC_Os03g53770	No alias	RNA recognition motif containing protein, putative, expressed	0.02	Orthogroups_2024-Update
Potri.019G037600	No alias	RNA binding (RRM/RBD/RNP motifs) family protein	0.03	Orthogroups_2024-Update
Pp1s17_207V6	No alias	nucleic acid binding protein	0.02	Orthogroups_2024-Update
Solyc10g076890	No alias	RNA binding (RRM/RBD/RNP motifs) family protein (AHRD...	0.04	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR000504	RRM_dom	7	67

External Links

No external refs found!