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  5. A4A49_07434

A4A49_07434


Description : putative polygalacturonase


Gene families : OG_42_0000306 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000306_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Nicotiana release: A4A49_07434
Cluster HCCA clusters: Cluster_10

Target Alias Description ECC score Gene Family Method Actions
At1g80170 No alias Probable polygalacturonase At1g80170... 0.03 Orthogroups_2024-Update
Bradi2g18030 No alias Pectin lyase-like superfamily protein 0.04 Orthogroups_2024-Update
Brara.C03237.1 No alias polygalacturonase *(QRT2) & EC_3.2 glycosylase 0.04 Orthogroups_2024-Update
Brara.C03581.1 No alias EC_3.2 glycosylase 0.03 Orthogroups_2024-Update
Glyma.19G140600 No alias polygalacturonase abscission zone A. thaliana 0.03 Orthogroups_2024-Update
Glyma.U005701 No alias Pectin lyase-like superfamily protein 0.04 Orthogroups_2024-Update
PSME_00023335-RA No alias (at1g80170 : 293.0) Pectin lyase-like superfamily... 0.03 Orthogroups_2024-Update
PSME_00033065-RA No alias (at1g80170 : 428.0) Pectin lyase-like superfamily... 0.02 Orthogroups_2024-Update
Seita.2G346300.1 No alias EC_3.2 glycosylase 0.03 Orthogroups_2024-Update
Sopen03g035390 No alias Glycosyl hydrolases family 28 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEA InterProScan predictions
BP GO:0005975 carbohydrate metabolic process IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR000743 Glyco_hydro_28 59 387
No external refs found!