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  5. Solyc02g090150

Solyc02g090150


Description : LOW QUALITY:Transducin/WD40 repeat-like superfamily protein (AHRD V3.3 *** AT3G50390.1)


Gene families : OG_42_0000343 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000343_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc02g090150
Cluster HCCA clusters: Cluster_24

Target Alias Description ECC score Gene Family Method Actions
A4A49_23288 No alias compass-like h3k4 histone methylase component wdr5b 0.09 Orthogroups_2024-Update
Potri.004G148400 No alias Transducin/WD40 repeat-like superfamily protein 0.03 Orthogroups_2024-Update
Potri.T124000 No alias Transducin/WD40 repeat-like superfamily protein 0.03 Orthogroups_2024-Update
Seita.9G099500.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sopen03g032900 No alias WD domain, G-beta repeat 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0015095 magnesium ion transmembrane transporter activity IEP Predicted GO
BP GO:0015693 magnesium ion transport IEP Predicted GO
BP GO:0070838 divalent metal ion transport IEP Predicted GO
BP GO:0072511 divalent inorganic cation transport IEP Predicted GO
InterPro domains Description Start Stop
IPR001680 WD40_repeat 99 125
IPR001680 WD40_repeat 207 236
IPR001680 WD40_repeat 242 277
IPR001680 WD40_repeat 335 367
IPR001680 WD40_repeat 299 325
IPR001680 WD40_repeat 375 418
No external refs found!