Sopen10g029370

Description : Zinc finger C-x8-C-x5-C-x3-H type (and similar)

Gene families : OG_42_0001307 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001307_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Sopen10g029370
Cluster	HCCA clusters: Cluster_124

Target	Alias	Description	ECC score	Gene Family Method	Actions
Bradi3g06940	No alias	KH domain-containing protein / zinc finger (CCCH type)...	0.03	Orthogroups_2024-Update
PSME_00034990-RA	No alias	(at5g06770 : 169.0) KH domain-containing protein / zinc...	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	IEA	InterProScan predictions
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR000571	Znf_CCCH	260	284
IPR000571	Znf_CCCH	36	60
IPR000571	Znf_CCCH	97	122
IPR004088	KH_dom_type_1	169	232

External Links

No external refs found!