A4A49_08820


Description : dna repair helicase xpd


Gene families : OG_42_0002822 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002822_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Nicotiana release: A4A49_08820
Cluster HCCA clusters: Cluster_22

Target Alias Description ECC score Gene Family Method Actions
A4A49_33669 No alias dna repair helicase xpd 0.04 Orthogroups_2024-Update
At1g20750 No alias RAD3-like DNA-binding helicase protein... 0.03 Orthogroups_2024-Update
Brara.I01147.1 No alias dsDNA helicase *(FANCJ) 0.03 Orthogroups_2024-Update
Glyma.14G223700 No alias RAD3-like DNA-binding helicase protein 0.04 Orthogroups_2024-Update
HORVU5Hr1G087670.18 No alias dsDNA helicase *(FANCJ) 0.02 Orthogroups_2024-Update
Kfl00025_0470 kfl00025_0470_v1.1 (at1g20720 : 643.0) RAD3-like DNA-binding helicase... 0.01 Orthogroups_2024-Update
PSME_00006713-RA No alias (at1g20720 : 86.3) RAD3-like DNA-binding helicase... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
MF GO:0003677 DNA binding IEA InterProScan predictions
MF GO:0004003 ATP-dependent DNA helicase activity IEA InterProScan predictions
MF GO:0005524 ATP binding IEA InterProScan predictions
BP GO:0006139 nucleobase-containing compound metabolic process IEA InterProScan predictions
MF GO:0008026 ATP-dependent helicase activity IEA InterProScan predictions
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEA InterProScan predictions
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR010614 DEAD_2 99 260
IPR006555 ATP-dep_Helicase_C 514 708
No external refs found!