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  5. Sopen10g029490

Sopen10g029490


Description : RNA polymerase Rpb2, domain 6


Gene families : OG_42_0000798 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000798_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen10g029490
Cluster HCCA clusters: Cluster_107

Target Alias Description ECC score Gene Family Method Actions
GRMZM2G054225 No alias nuclear RNA polymerase D2A 0.02 Orthogroups_2024-Update
GRMZM2G427031 No alias nuclear RNA polymerase D2A 0.02 Orthogroups_2024-Update
Glyma.06G061600 No alias nuclear RNA polymerase D2A 0.03 Orthogroups_2024-Update
PSME_00007346-RA No alias (at4g21710 : 1979.0) Encodes the unique second-largest... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA InterProScan predictions
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA InterProScan predictions
BP GO:0006351 transcription, DNA-templated IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR007645 RNA_pol_Rpb2_3 450 514
IPR007641 RNA_pol_Rpb2_7 1059 1149
IPR007644 RNA_pol_bsu_protrusion 45 407
IPR007646 RNA_pol_Rpb2_4 553 610
IPR007642 RNA_pol_Rpb2_2 196 374
IPR007120 DNA-dir_RNAP_su2_dom 680 1057
IPR007647 RNA_pol_Rpb2_5 633 673
No external refs found!