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  5. Sopen10g030160

Sopen10g030160


Description : Helicase C-terminal domain


Gene families : OG_42_0002822 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002822_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen10g030160
Cluster HCCA clusters: Cluster_315

Target Alias Description ECC score Gene Family Method Actions
408754 No alias RAD3-like DNA-binding helicase protein 0.03 Orthogroups_2024-Update
Brara.G02014.1 No alias regulatory helicase *(RTEL) 0.04 Orthogroups_2024-Update
Brara.G03750.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Cre09.g397350 No alias RAD3-like DNA-binding helicase protein 0.03 Orthogroups_2024-Update
Sobic.002G290000.2 No alias dsDNA helicase *(FANCJ) 0.12 Orthogroups_2024-Update
Solyc10g079510 No alias RAD3-like DNA-binding helicase protein (AHRD V3.3 ***... 0.13 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
MF GO:0003677 DNA binding IEA InterProScan predictions
MF GO:0004003 ATP-dependent DNA helicase activity IEA InterProScan predictions
MF GO:0005524 ATP binding IEA InterProScan predictions
BP GO:0006139 nucleobase-containing compound metabolic process IEA InterProScan predictions
MF GO:0008026 ATP-dependent helicase activity IEA InterProScan predictions
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR006555 ATP-dep_Helicase_C 606 816
IPR010614 DEAD_2 204 366
No external refs found!