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  5. Sopen10g030820

Sopen10g030820


Description : Glycosyl hydrolases family 28


Gene families : OG_42_0000306 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000306_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen10g030820
Cluster HCCA clusters: Cluster_55

Target Alias Description ECC score Gene Family Method Actions
Glyma.11G162574 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.19G140600 No alias polygalacturonase abscission zone A. thaliana 0.03 Orthogroups_2024-Update
HORVU1Hr1G079140.6 No alias EC_3.2 glycosylase 0.02 Orthogroups_2024-Update
MA_63122g0010 No alias (at1g23460 : 261.0) Pectin lyase-like superfamily... 0.02 Orthogroups_2024-Update
PSME_00033065-RA No alias (at1g80170 : 428.0) Pectin lyase-like superfamily... 0.03 Orthogroups_2024-Update
PSME_00040555-RA No alias no hits & (original description: no original description) 0.03 Orthogroups_2024-Update
Sobic.001G045900.1 No alias polygalacturonase *(QRT2) & EC_3.2 glycosylase 0.02 Orthogroups_2024-Update
Solyc01g087280 No alias Pectin lyase-like superfamily protein (AHRD V3.3 *** AT3G07970.1) 0.03 Orthogroups_2024-Update
Solyc04g015530 No alias Pectin lyase-like superfamily protein (AHRD V3.3 *** AT3G57510.1) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEA InterProScan predictions
BP GO:0005975 carbohydrate metabolic process IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR000743 Glyco_hydro_28 103 432
No external refs found!