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  5. Sopen10g030910

Sopen10g030910


Description : RNA polymerase Rpb1, domain 5


Gene families : OG_42_0005280 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0005280_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen10g030910
Cluster HCCA clusters: Cluster_122

Target Alias Description ECC score Gene Family Method Actions
At3g57660 No alias DNA-directed RNA polymerase I subunit 1... 0.03 Orthogroups_2024-Update
Bradi1g02621 No alias nuclear RNA polymerase A1 0.08 Orthogroups_2024-Update
Brara.I03983.1 No alias component *(NRPA1) of RNA polymerase I complex 0.08 Orthogroups_2024-Update
Cre12.g529600 No alias nuclear RNA polymerase A1 0.1 Orthogroups_2024-Update
Glyma.10G095200 No alias nuclear RNA polymerase A1 0.06 Orthogroups_2024-Update
HORVU5Hr1G117770.4 No alias component *(NRPA1) of RNA polymerase I complex 0.09 Orthogroups_2024-Update
Kfl00093_0040 kfl00093_0040_v1.1 (at3g57660 : 885.0) Encodes a subunit of RNA polymerase... 0.02 Orthogroups_2024-Update
Mp6g07700.1 No alias subunit 1 of Pol I RNA polymerase 0.03 Orthogroups_2024-Update
Pp1s338_40V6 No alias dna-directed rna polymerase i largest 0.07 Orthogroups_2024-Update
Seita.4G217700.1 No alias component *(NRPA1) of RNA polymerase I complex 0.09 Orthogroups_2024-Update
Sobic.009G217200.1 No alias component *(NRPA1) of RNA polymerase I complex 0.11 Orthogroups_2024-Update
Solyc10g080350 No alias DNA-directed RNA polymerase subunit (AHRD V3.3 *** K4D2S5_SOLLC) 0.12 Orthogroups_2024-Update
evm.model.contig_4406.10 No alias (at3g57660 : 696.0) Encodes a subunit of RNA polymerase... 0.02 Orthogroups_2024-Update
evm.model.tig00000203.25 No alias (at3g57660 : 513.0) Encodes a subunit of RNA polymerase... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA InterProScan predictions
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA InterProScan predictions
BP GO:0006351 transcription, DNA-templated IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR007066 RNA_pol_Rpb1_3 634 837
IPR007083 RNA_pol_Rpb1_4 880 986
IPR007080 RNA_pol_Rpb1_1 7 443
IPR000722 RNA_pol_asu 446 630
IPR007081 RNA_pol_Rpb1_5 993 1619
No external refs found!