A4A49_11921

Description : putative pre-mrna-splicing factor atp-dependent rna helicase deah4

Gene families : OG_42_0000210 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000210_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Nicotiana release: A4A49_11921
Cluster	HCCA clusters: Cluster_28

Target	Alias	Description	ECC score	Gene Family Method
Cre07.g349100	No alias	RNA helicase family protein	0.01	Orthogroups_2024-Update
Cre12.g520150	No alias	RNA helicase family protein	0.01	Orthogroups_2024-Update
Cre24.g755347	No alias	RNA helicase family protein	0.01	Orthogroups_2024-Update
GRMZM2G012453	No alias	ATP-dependent RNA helicase, putative	0.03	Orthogroups_2024-Update
HORVU0Hr1G007860.1	No alias	Unknown function	0.02	Orthogroups_2024-Update
Kfl00085_0100	kfl00085_0100_v1.1	(at1g32490 : 1214.0) Encodes a homolog of the yeast PRP2...	0.02	Orthogroups_2024-Update
LOC_Os02g50370	No alias	helicase domain-containing protein, putative, expressed	0.02	Orthogroups_2024-Update
Pp1s331_36V6	No alias	deah (asp-glu-ala-his) box polypeptide 38	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	InterProScan predictions
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004386	helicase activity	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	InterProScan predictions
MF	GO:0008144	drug binding	None	Extended
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	nucleoside-triphosphatase activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR001650	Helicase_C	208	335
IPR011709	DUF1605	559	639
IPR007502	Helicase-assoc_dom	400	492
IPR011545	DEAD/DEAH_box_helicase_dom	11	165

External Links

No external refs found!