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A4A49_11942


Description : dna-directed rna polymerase ii subunit rpb2


Gene families : OG_42_0000798 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000798_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Nicotiana release: A4A49_11942
Cluster HCCA clusters: Cluster_9

Target Alias Description ECC score Gene Family Method Actions
Bradi2g05777 No alias nuclear RNA polymerase D2A 0.03 Orthogroups_2024-Update
HORVU2Hr1G115600.3 No alias component *(NRPE2) of RNA polymerase V complex &... 0.03 Orthogroups_2024-Update
Kfl00016_0440 kfl00016_0440_v1.1 (at4g21710 : 1847.0) Encodes the unique second-largest... 0.02 Orthogroups_2024-Update
Pp1s84_245V6 No alias rna polymerase ii second largest subunit 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA InterProScan predictions
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA InterProScan predictions
BP GO:0006351 transcription, DNA-templated IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR007647 RNA_pol_Rpb2_5 656 707
IPR007642 RNA_pol_Rpb2_2 207 398
IPR007646 RNA_pol_Rpb2_4 570 631
IPR007120 DNA-dir_RNAP_su2_dom 714 1084
IPR007641 RNA_pol_Rpb2_7 1086 1177
IPR007644 RNA_pol_bsu_protrusion 37 446
IPR007645 RNA_pol_Rpb2_3 471 535
No external refs found!