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  5. A4A49_14444

A4A49_14444


Description : putative polygalacturonase


Gene families : OG_42_0000306 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000306_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Nicotiana release: A4A49_14444
Cluster HCCA clusters: Cluster_11

Target Alias Description ECC score Gene Family Method Actions
Bradi1g04641 No alias Pectin lyase-like superfamily protein 0.02 Orthogroups_2024-Update
Bradi2g18030 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
Brara.C03237.1 No alias polygalacturonase *(QRT2) & EC_3.2 glycosylase 0.03 Orthogroups_2024-Update
Brara.G00978.1 No alias EC_3.2 glycosylase 0.03 Orthogroups_2024-Update
Brara.H02210.1 No alias EC_3.2 glycosylase 0.05 Orthogroups_2024-Update
GRMZM5G831200 No alias Pectin lyase-like superfamily protein 0.02 Orthogroups_2024-Update
Glyma.14G044200 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.15G009800 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
LOC_Os07g10730 No alias polygalacturonase, putative, expressed 0.02 Orthogroups_2024-Update
MA_63122g0010 No alias (at1g23460 : 261.0) Pectin lyase-like superfamily... 0.04 Orthogroups_2024-Update
MA_96282g0010 No alias no hits & (original description: no original description) 0.06 Orthogroups_2024-Update
PSME_00006809-RA No alias (at1g23460 : 407.0) Pectin lyase-like superfamily... 0.06 Orthogroups_2024-Update
PSME_00023336-RA No alias (at1g80170 : 252.0) Pectin lyase-like superfamily... 0.02 Orthogroups_2024-Update
PSME_00033065-RA No alias (at1g80170 : 428.0) Pectin lyase-like superfamily... 0.04 Orthogroups_2024-Update
PSME_00040555-RA No alias no hits & (original description: no original description) 0.03 Orthogroups_2024-Update
Potri.001G171900 No alias Pectin lyase-like superfamily protein 0.05 Orthogroups_2024-Update
Potri.018G028700 No alias Pectin lyase-like superfamily protein 0.02 Orthogroups_2024-Update
Sobic.004G028700.1 No alias EC_3.2 glycosylase 0.03 Orthogroups_2024-Update
Sopen08g016250 No alias Glycosyl hydrolases family 28 0.02 Orthogroups_2024-Update
Sopen12g004420 No alias Glycosyl hydrolases family 28 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEA InterProScan predictions
BP GO:0005975 carbohydrate metabolic process IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR000743 Glyco_hydro_28 93 415
No external refs found!