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  5. A4A49_14463

A4A49_14463


Description : replication protein a 70 kda dna-binding subunit d


Gene families : OG_42_0005194 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0005194_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Nicotiana release: A4A49_14463
Cluster HCCA clusters: Cluster_31

Target Alias Description ECC score Gene Family Method Actions
141493 No alias RPA70-kDa subunit B 0.03 Orthogroups_2024-Update
At5g61000 No alias Replication protein A subunit... 0.05 Orthogroups_2024-Update
Brara.C00322.1 No alias component *(RPA1) of single-stranded-DNA binding RPA... 0.06 Orthogroups_2024-Update
Brara.C04221.1 No alias component *(RPA1) of single-stranded-DNA binding RPA... 0.04 Orthogroups_2024-Update
Brara.I00644.1 No alias component *(RPA1) of single-stranded-DNA binding RPA... 0.06 Orthogroups_2024-Update
Cre16.g651000 No alias Replication factor-A protein 1-related 0.05 Orthogroups_2024-Update
Glyma.05G020600 No alias RPA70-kDa subunit B 0.07 Orthogroups_2024-Update
Glyma.17G078700 No alias RPA70-kDa subunit B 0.03 Orthogroups_2024-Update
Kfl00057_0150 kfl00057_0150_v1.... (at5g08020 : 486.0) Encodes a homolog of Replication... 0.04 Orthogroups_2024-Update
LOC_Os03g11540 No alias RPA1B - Putative single-stranded DNA binding complex... 0.02 Orthogroups_2024-Update
Sobic.001G456500.1 No alias component *(RPA1) of single-stranded-DNA binding RPA... 0.08 Orthogroups_2024-Update
Solyc03g115050 No alias Replication A 70 kDa DNA-binding subunit (AHRD V3.3 ***... 0.09 Orthogroups_2024-Update
Sopen03g034120 No alias Replication factor-A C terminal domain 0.07 Orthogroups_2024-Update
evm.model.contig_2501.4 No alias (at5g61000 : 172.0) RPA70D; FUNCTIONS IN: DNA binding,... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
MF GO:0003677 DNA binding IEA InterProScan predictions
CC GO:0005634 nucleus IEA InterProScan predictions
BP GO:0006260 DNA replication IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR031657 REPA_OB_2 310 404
IPR004365 NA-bd_OB_tRNA 190 276
IPR007199 Rep_factor-A_N 5 103
IPR013955 Rep_factor-A_C 467 612
No external refs found!