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  5. A4A49_15920

A4A49_15920


Description : casparian strip membrane protein 1


Gene families : OG_42_0000213 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000213_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Nicotiana release: A4A49_15920
Cluster HCCA clusters: Cluster_31

Target Alias Description ECC score Gene Family Method Actions
A4A49_03550 No alias casparian strip membrane protein 1 0.03 Orthogroups_2024-Update
A4A49_12663 No alias casparian strip membrane protein 2 0.06 Orthogroups_2024-Update
A4A49_22807 No alias casparian strip membrane protein 2 0.05 Orthogroups_2024-Update
At2g36100 No alias Casparian strip membrane protein 1... 0.03 Orthogroups_2024-Update
At4g15610 No alias CASP-like protein 1D1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FE29] 0.03 Orthogroups_2024-Update
Bradi1g29070 No alias Uncharacterised protein family (UPF0497) 0.04 Orthogroups_2024-Update
Bradi2g12830 No alias Uncharacterised protein family (UPF0497) 0.03 Orthogroups_2024-Update
PSME_00003333-RA No alias (at2g36100 : 90.5) Uncharacterised protein family... 0.03 Orthogroups_2024-Update
PSME_00052040-RA No alias (at5g44550 : 92.4) Uncharacterised protein family... 0.02 Orthogroups_2024-Update
Seita.3G084500.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Solyc01g067330 No alias CASP-like protein (AHRD V3.3 *** K4AWY2_SOLLC) 0.03 Orthogroups_2024-Update
Solyc02g069730 No alias CASP-like protein (AHRD V3.3 *** K4B7V5_SOLLC) 0.03 Orthogroups_2024-Update
Solyc06g072550 No alias CASP-like protein (AHRD V3.3 *** K4C8X5_SOLLC) 0.03 Orthogroups_2024-Update
Sopen09g004940 No alias Domain of unknown function (DUF588) 0.03 Orthogroups_2024-Update
Sopen09g029380 No alias Domain of unknown function (DUF588) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR006702 CASP_dom 45 192
No external refs found!