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  5. A4A49_18383

A4A49_18383


Description : putative polygalacturonase


Gene families : OG_42_0000259 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000259_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Nicotiana release: A4A49_18383
Cluster HCCA clusters: Cluster_21

Target Alias Description ECC score Gene Family Method Actions
At4g23820 No alias Pectin lyase-like superfamily protein... 0.05 Orthogroups_2024-Update
Brara.F01639.1 No alias EC_3.2 glycosylase 0.02 Orthogroups_2024-Update
GRMZM5G882418 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.03G216800 No alias Pectin lyase-like superfamily protein 0.04 Orthogroups_2024-Update
Glyma.09G132100 No alias Pectin lyase-like superfamily protein 0.02 Orthogroups_2024-Update
Solyc01g094970 No alias Pectin lyase-like superfamily protein (AHRD V3.3 *** AT3G61490.4) 0.03 Orthogroups_2024-Update
Sopen01g038750 No alias Glycosyl hydrolases family 28 0.04 Orthogroups_2024-Update
Sopen08g030460 No alias Glycosyl hydrolases family 28 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEA InterProScan predictions
BP GO:0005975 carbohydrate metabolic process IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR000743 Glyco_hydro_28 134 474
No external refs found!