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  5. Sopen10g035530

Sopen10g035530


Description : RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)


Gene families : OG_42_0002384 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002384_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen10g035530
Cluster HCCA clusters: Cluster_11

Target Alias Description ECC score Gene Family Method Actions
A4A49_03772 No alias 29 kda ribonucleoprotein a, chloroplastic 0.03 Orthogroups_2024-Update
At2g37220 No alias RNA-binding protein CP29B, chloroplastic... 0.03 Orthogroups_2024-Update
Bradi1g20440 No alias chloroplast RNA-binding protein 29 0.08 Orthogroups_2024-Update
Bradi1g61250 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.03 Orthogroups_2024-Update
Brara.C01867.1 No alias plastidial ribonucleoprotein *(CP29) 0.02 Orthogroups_2024-Update
Brara.E00783.1 No alias plastidial ribonucleoprotein *(CP29) 0.05 Orthogroups_2024-Update
Brara.G01591.1 No alias plastidial ribonucleoprotein *(CP29) 0.05 Orthogroups_2024-Update
Brara.I03035.1 No alias plastidial ribonucleoprotein *(CP29) 0.04 Orthogroups_2024-Update
Brara.I03636.1 No alias plastidial ribonucleoprotein *(CP29) 0.03 Orthogroups_2024-Update
GRMZM2G068715 No alias chloroplast RNA-binding protein 29 0.05 Orthogroups_2024-Update
GRMZM2G158835 No alias chloroplast RNA-binding protein 29 0.02 Orthogroups_2024-Update
Glyma.10G058500 No alias chloroplast RNA-binding protein 29 0.04 Orthogroups_2024-Update
Glyma.13G145200 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.06 Orthogroups_2024-Update
HORVU1Hr1G009390.1 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU3Hr1G083830.1 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU4Hr1G048440.1 No alias plastidial ribonucleoprotein *(CP29) 0.02 Orthogroups_2024-Update
LOC_Os03g25960 No alias RNA recognition motif containing protein, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os07g43810 No alias RNA recognition motif containing protein, putative, expressed 0.04 Orthogroups_2024-Update
Potri.006G127200 No alias chloroplast RNA-binding protein 29 0.07 Orthogroups_2024-Update
Potri.016G090700 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.06 Orthogroups_2024-Update
Seita.9G388600.1 No alias plastidial ribonucleoprotein *(CP29) 0.06 Orthogroups_2024-Update
Sobic.001G357200.1 No alias plastidial ribonucleoprotein *(CP29) 0.08 Orthogroups_2024-Update
Solyc09g007850 No alias RNA binding protein (AHRD V3.3 *** Q39209_ARATH) 0.05 Orthogroups_2024-Update
Solyc10g086150 No alias RNA-binding (RRM/RBD/RNP motifs) family protein (AHRD... 0.14 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR000504 RRM_dom 207 277
IPR000504 RRM_dom 95 165
No external refs found!