A4A49_18836

Description : regulator of nonsense transcripts upf2

Gene families : OG_42_0004320 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004320_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Nicotiana release: A4A49_18836
Cluster	HCCA clusters: Cluster_9

Target	Alias	Description	ECC score	Gene Family Method
440923	No alias	binding;RNA binding	0.02	Orthogroups_2024-Update
Bradi3g49427	No alias	binding;RNA binding	0.03	Orthogroups_2024-Update
Glyma.09G087900	No alias	binding;RNA binding	0.04	Orthogroups_2024-Update
PSME_00010999-RA	No alias	(at2g39260 : 507.0) binding;RNA binding; FUNCTIONS IN:...	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	InterProScan predictions
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR007193	Upf2/Nmd2_C	1003	1139
IPR003890	MIF4G-like_typ-3	687	881
IPR003890	MIF4G-like_typ-3	485	669

External Links

No external refs found!