1. Home
  2. Species
  3. Nicotiana attenuata
  4. Sequence
  5. A4A49_19333

A4A49_19333


Description : dynein assembly factor with wdr repeat domains 1


Gene families : OG_42_0001305 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001305_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Nicotiana release: A4A49_19333
Cluster HCCA clusters: Cluster_83

Target Alias Description ECC score Gene Family Method Actions
Glyma.05G038000 No alias Transducin family protein / WD-40 repeat family protein 0.03 Orthogroups_2024-Update
PSME_00029703-RA No alias (at5g16750 : 223.0) Encodes a nucleolar localized WD-40... 0.01 Orthogroups_2024-Update
PSME_00040435-RA No alias (at5g16750 : 352.0) Encodes a nucleolar localized WD-40... 0.03 Orthogroups_2024-Update
evm.model.tig00000704.60 No alias no hits & (original description: no original description) 0.02 Orthogroups_2024-Update
evm.model.tig00000704.61 No alias (at5g16750 : 313.0) Encodes a nucleolar localized WD-40... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
BP GO:0006364 rRNA processing IEA InterProScan predictions
CC GO:0032040 small-subunit processome IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001680 WD40_repeat 387 427
IPR001680 WD40_repeat 568 605
IPR001680 WD40_repeat 179 216
IPR001680 WD40_repeat 56 88
IPR001680 WD40_repeat 136 174
IPR001680 WD40_repeat 530 563
IPR001680 WD40_repeat 433 469
IPR001680 WD40_repeat 611 647
IPR001680 WD40_repeat 491 521
IPR001680 WD40_repeat 93 130
IPR013934 SSU_processome_Utp13 670 803
No external refs found!