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  5. A4A49_20292

A4A49_20292


Description : 50s ribosomal protein l13, chloroplastic


Gene families : OG_42_0005662 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0005662_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Nicotiana release: A4A49_20292
Cluster HCCA clusters: Cluster_78

Target Alias Description ECC score Gene Family Method Actions
7665 No alias Ribosomal protein L13 family protein 0.02 Orthogroups_2024-Update
Bradi2g49850 No alias Ribosomal protein L13 family protein 0.04 Orthogroups_2024-Update
Brara.B02333.1 No alias component *(uL13c) of large plastid ribosomal-subunit proteome 0.04 Orthogroups_2024-Update
Brara.G03600.1 No alias component *(uL13c) of large plastid ribosomal-subunit proteome 0.08 Orthogroups_2024-Update
Cre06.g264350 No alias Ribosomal protein L13 family protein 0.11 Orthogroups_2024-Update
GRMZM2G043212 No alias Ribosomal protein L13 family protein 0.04 Orthogroups_2024-Update
Glyma.15G209000 No alias Ribosomal protein L13 family protein 0.04 Orthogroups_2024-Update
HORVU3Hr1G071530.1 No alias component *(uL13c) of large plastid ribosomal-subunit proteome 0.06 Orthogroups_2024-Update
Kfl00255_0080 kfl00255_0080_v1.1 (at1g78630 : 240.0) embryo defective 1473 (emb1473);... 0.03 Orthogroups_2024-Update
LOC_Os01g54540 No alias ribosomal protein L13, putative, expressed 0.03 Orthogroups_2024-Update
MA_10433400g0010 No alias (at1g78630 : 164.0) embryo defective 1473 (emb1473);... 0.03 Orthogroups_2024-Update
Pp1s365_36V6 No alias ribosomal protein l13 0.08 Orthogroups_2024-Update
Seita.5G318200.1 No alias component *(uL13c) of large plastid ribosomal-subunit proteome 0.02 Orthogroups_2024-Update
Sobic.003G295800.1 No alias component *(uL13c) of large plastid ribosomal-subunit proteome 0.04 Orthogroups_2024-Update
Solyc12g014390 No alias Non-LTR retroelement reverse transcriptase-like protein,... 0.02 Orthogroups_2024-Update
evm.model.tig00020912.24 No alias (at1g78630 : 99.8) embryo defective 1473 (emb1473);... 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA InterProScan predictions
CC GO:0005840 ribosome IEA InterProScan predictions
BP GO:0006412 translation IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR005822 Ribosomal_L13 105 227
No external refs found!