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  5. A4A49_20590

A4A49_20590


Description : mads-box transcription factor 27


Gene families : OG_42_0000009 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Nicotiana release: A4A49_20590
Cluster HCCA clusters: Cluster_16

Target Alias Description ECC score Gene Family Method Actions
A4A49_07845 No alias agamous-like mads-box protein agl8 0.03 Orthogroups_2024-Update
A4A49_14436 No alias agamous-like mads-box protein agl11 0.04 Orthogroups_2024-Update
A4A49_14828 No alias agamous-like mads-box protein agl104 0.04 Orthogroups_2024-Update
A4A49_18077 No alias floral homeotic protein apetala 1 c 0.02 Orthogroups_2024-Update
A4A49_26362 No alias floral homeotic protein globosa 0.03 Orthogroups_2024-Update
A4A49_29655 No alias floral homeotic protein globosa 0.03 Orthogroups_2024-Update
At2g45650 No alias AGAMOUS-like protein 6 [Source:UniProtKB/TrEMBL;Acc:Q1PEU3] 0.03 Orthogroups_2024-Update
At4g09960 No alias K-box region and MADS-box transcription factor family... 0.04 Orthogroups_2024-Update
At4g36590 No alias MADS-box protein [Source:UniProtKB/TrEMBL;Acc:O23222] 0.03 Orthogroups_2024-Update
Bradi2g57000 No alias K-box region and MADS-box transcription factor family protein 0.02 Orthogroups_2024-Update
Brara.B03164.1 No alias regulatory protein *(SEPALLATA) of floral meristem... 0.02 Orthogroups_2024-Update
Brara.I02486.1 No alias MADS/AGL-type transcription factor 0.03 Orthogroups_2024-Update
GRMZM2G171365 No alias AGAMOUS-like 20 0.03 Orthogroups_2024-Update
Glyma.05G163200 No alias K-box region and MADS-box transcription factor family protein 0.01 Orthogroups_2024-Update
Glyma.08G282500 No alias AGAMOUS-like 29 0.03 Orthogroups_2024-Update
Glyma.09G266200 No alias AGAMOUS-like 20 0.03 Orthogroups_2024-Update
Glyma.09G266400 No alias AGAMOUS-like 6 0.03 Orthogroups_2024-Update
HORVU3Hr1G091000.8 No alias component *(PISTILLATA) of AP3-PISTILLATA organ-identity... 0.02 Orthogroups_2024-Update
HORVU5Hr1G110470.1 No alias MADS/AGL-type transcription factor 0.02 Orthogroups_2024-Update
LOC_Os01g69850 No alias OsMADS65 - MADS-box family gene with MIKC* type-box, expressed 0.02 Orthogroups_2024-Update
LOC_Os10g39130 No alias OsMADS56 - MADS-box family gene with MIKCc type-box, expressed 0.04 Orthogroups_2024-Update
Potri.001G112400 No alias AGAMOUS-like 19 0.03 Orthogroups_2024-Update
Potri.004G115500 No alias K-box region and MADS-box transcription factor family protein 0.03 Orthogroups_2024-Update
Seita.1G273400.1 No alias regulatory protein *(SEPALLATA) of floral meristem... 0.04 Orthogroups_2024-Update
Seita.3G098400.1 No alias MADS/AGL-type transcription factor 0.02 Orthogroups_2024-Update
Sobic.007G192900.1 No alias MADS/AGL-type transcription factor 0.02 Orthogroups_2024-Update
Sopen02g015950 No alias K-box region 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA InterProScan predictions
MF GO:0046983 protein dimerization activity IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002100 TF_MADSbox 10 57
No external refs found!