A4A49_20601

Description : hypothetical protein

Gene families : OG_42_0007688 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0007688_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Nicotiana release: A4A49_20601
Cluster	HCCA clusters: Cluster_166

Target	Alias	Description	ECC score	Gene Family Method
Bradi2g16350	No alias	16S rRNA processing protein RimM family	0.02	Orthogroups_2024-Update
LOC_Os05g49130	No alias	16S rRNA processing protein RimM containing protein, expressed	0.02	Orthogroups_2024-Update
Solyc02g071280	No alias	16S rRNA processing protein RimM family (AHRD V3.3 ***...	0.03	Orthogroups_2024-Update
Sopen02g020340	No alias	RimM N-terminal domain	0.05	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006364	rRNA processing	IEA	InterProScan predictions
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016072	rRNA metabolic process	None	Extended
BP	GO:0034470	ncRNA processing	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR027275	PRC-brl_dom	174	266
IPR002676	RimM_N	80	167

External Links

No external refs found!