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  5. Sopen11g002280

Sopen11g002280


Description : PPR repeat


Gene families : OG_42_0000146 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000146_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen11g002280
Cluster HCCA clusters: Cluster_107

Target Alias Description ECC score Gene Family Method Actions
402120 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
406783 No alias PENTATRICOPEPTIDE REPEAT 596 0.02 Orthogroups_2024-Update
412643 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
420704 No alias PENTATRICOPEPTIDE REPEAT 596 0.03 Orthogroups_2024-Update
421992 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
444771 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
At1g02370 No alias Pentatricopeptide repeat-containing protein At1g02370,... 0.06 Orthogroups_2024-Update
At1g80270 No alias PPR596 [Source:UniProtKB/TrEMBL;Acc:A0A178W3Z6] 0.05 Orthogroups_2024-Update
At2g20710 No alias Pentatricopeptide repeat-containing protein At2g20710,... 0.04 Orthogroups_2024-Update
At3g15590 No alias Pentatricopeptide repeat-containing protein At3g15590,... 0.04 Orthogroups_2024-Update
At4g01990 No alias Pentatricopeptide repeat-containing protein At4g01990,... 0.02 Orthogroups_2024-Update
At5g09450 No alias Pentatricopeptide repeat-containing protein At5g09450,... 0.04 Orthogroups_2024-Update
Bradi1g49750 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
Bradi2g10850 No alias PENTATRICOPEPTIDE REPEAT 596 0.06 Orthogroups_2024-Update
Bradi2g11510 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Bradi3g30090 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Bradi5g17360 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Brara.C02834.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Brara.E02579.1 No alias RNA editing factor *(POCO) 0.02 Orthogroups_2024-Update
Brara.F01064.1 No alias RNA editing factor *(POCO) 0.05 Orthogroups_2024-Update
Brara.G02029.1 No alias RNA editing factor *(POCO) 0.06 Orthogroups_2024-Update
GRMZM2G130366 No alias PENTATRICOPEPTIDE REPEAT 596 0.02 Orthogroups_2024-Update
Glyma.02G000600 No alias PENTATRICOPEPTIDE REPEAT 596 0.06 Orthogroups_2024-Update
Glyma.03G108100 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.03G127100 No alias PENTATRICOPEPTIDE REPEAT 596 0.03 Orthogroups_2024-Update
Glyma.07G119200 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.08G283500 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.10G000600 No alias PENTATRICOPEPTIDE REPEAT 596 0.03 Orthogroups_2024-Update
Glyma.12G203800 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.19G129900 No alias PENTATRICOPEPTIDE REPEAT 596 0.05 Orthogroups_2024-Update
HORVU2Hr1G093220.6 No alias splicing factor *(CRR16) 0.02 Orthogroups_2024-Update
MA_100637g0010 No alias (at1g60770 : 330.0) Tetratricopeptide repeat (TPR)-like... 0.02 Orthogroups_2024-Update
MA_492314g0010 No alias (at1g80270 : 290.0) PENTATRICOPEPTIDE REPEAT 596... 0.02 Orthogroups_2024-Update
Potri.013G132500 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Potri.013G133000 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
Potri.014G050300 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Potri.016G036100 No alias PENTATRICOPEPTIDE REPEAT 596 0.05 Orthogroups_2024-Update
Potri.016G063400 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Seita.2G083900.1 No alias RNA editing factor *(POCO) 0.03 Orthogroups_2024-Update
Seita.4G018800.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.5G027300.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Seita.5G038700.1 No alias RNA editing factor *(POCO) 0.04 Orthogroups_2024-Update
Seita.9G203100.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.002G078100.1 No alias RNA editing factor *(POCO) 0.04 Orthogroups_2024-Update
Sobic.003G134000.2 No alias RNA editing factor *(POCO) 0.04 Orthogroups_2024-Update
Sobic.003G144000.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.008G113200.2 No alias splicing factor *(RTP7) 0.02 Orthogroups_2024-Update
Sobic.010G018900.1 No alias Unknown function 0.05 Orthogroups_2024-Update
Solyc01g079320 No alias Pentatricopeptide repeat-containing protein, putative... 0.1 Orthogroups_2024-Update
Solyc01g089870 No alias Pentatricopeptide repeat-containing family protein (AHRD... 0.03 Orthogroups_2024-Update
Solyc06g005140 No alias Pentatricopeptide repeat-containing family protein (AHRD... 0.04 Orthogroups_2024-Update
Solyc11g006380 No alias Pentatricopeptide repeat-containing family protein (AHRD... 0.08 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 340 366
IPR002885 Pentatricopeptide_repeat 127 155
IPR002885 Pentatricopeptide_repeat 302 328
IPR002885 Pentatricopeptide_repeat 216 277
IPR002885 Pentatricopeptide_repeat 162 206
No external refs found!