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Sopen11g002610


Description : PPR repeat family


Gene families : OG_42_0006730 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0006730_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood Solanum release: Sopen11g002610
Cluster HCCA clusters: Cluster_46

Target Alias Description ECC score Gene Family Method Actions
Seita.3G009400.1 No alias trans-splicing factor *(PPR4) 0.05 Orthogroups_2024-Update
Sobic.006G273400.1 No alias trans-splicing factor *(PPR4) 0.03 Orthogroups_2024-Update
Solyc11g006680 No alias Pentatricopeptide repeat-containing protein, putative... 0.08 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR000504 RRM_dom 150 222
IPR002885 Pentatricopeptide_repeat 524 578
IPR002885 Pentatricopeptide_repeat 399 428
IPR002885 Pentatricopeptide_repeat 296 323
IPR002885 Pentatricopeptide_repeat 434 463
IPR002885 Pentatricopeptide_repeat 605 653
IPR002885 Pentatricopeptide_repeat 325 374
IPR002885 Pentatricopeptide_repeat 784 827
IPR002885 Pentatricopeptide_repeat 711 759
IPR002885 Pentatricopeptide_repeat 465 512
IPR002885 Pentatricopeptide_repeat 672 704
No external refs found!