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  5. A4A49_22271

A4A49_22271


Description : putative polygalacturonase


Gene families : OG_42_0000259 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000259_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Nicotiana release: A4A49_22271
Cluster HCCA clusters: Cluster_14

Target Alias Description ECC score Gene Family Method Actions
A4A49_10089 No alias putative polygalacturonase 0.03 Orthogroups_2024-Update
Brara.G01531.1 No alias EC_3.2 glycosylase 0.03 Orthogroups_2024-Update
Brara.I04239.1 No alias EC_3.2 glycosylase 0.03 Orthogroups_2024-Update
GRMZM2G135763 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.05G210900 No alias Pectin lyase-like superfamily protein 0.04 Orthogroups_2024-Update
Glyma.09G041000 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.09G256100 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.15G146800 No alias Pectin lyase-like superfamily protein 0.04 Orthogroups_2024-Update
Glyma.15G179500 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.18G236700 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
LOC_Os02g15690 No alias polygalacturonase, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os03g03350 No alias polygalacturonase, putative, expressed 0.04 Orthogroups_2024-Update
LOC_Os11g43750 No alias polygalacturonase, putative, expressed 0.02 Orthogroups_2024-Update
MA_104339g0010 No alias (at4g23820 : 575.0) Pectin lyase-like superfamily... 0.04 Orthogroups_2024-Update
MA_10436451g0020 No alias (at4g23500 : 273.0) Pectin lyase-like superfamily... 0.03 Orthogroups_2024-Update
Sobic.010G005000.1 No alias EC_3.2 glycosylase 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEA InterProScan predictions
BP GO:0005975 carbohydrate metabolic process IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR000743 Glyco_hydro_28 160 447
No external refs found!