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  5. A4A49_22407

A4A49_22407


Description : cold shock protein 1


Gene families : OG_42_0001475 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001475_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Nicotiana release: A4A49_22407
Cluster HCCA clusters: Cluster_65

Target Alias Description ECC score Gene Family Method Actions
At4g38680 No alias GRP2 [Source:UniProtKB/TrEMBL;Acc:A0A178UYV3] 0.03 Orthogroups_2024-Update
Solyc01g111280 No alias cold shock domain protein 1 (AHRD V3.3 *** AT4G36020.2) 0.03 Orthogroups_2024-Update
Sopen01g053350 No alias 'Cold-shock' DNA-binding domain 0.03 Orthogroups_2024-Update
Sopen01g053360 No alias 'Cold-shock' DNA-binding domain 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
MF GO:0008270 zinc ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002059 CSP_DNA-bd 8 72
IPR001878 Znf_CCHC 142 157
IPR001878 Znf_CCHC 112 127
IPR001878 Znf_CCHC 205 220
IPR001878 Znf_CCHC 244 260
IPR001878 Znf_CCHC 173 189
No external refs found!