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  5. Sopen11g002860

Sopen11g002860


Description : PPR repeat


Gene families : OG_42_0009595 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0009595_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen11g002860
Cluster HCCA clusters: Cluster_236

Target Alias Description ECC score Gene Family Method Actions
Brara.D00848.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Potri.006G207500 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.02 Orthogroups_2024-Update
Solyc11g006940 No alias Pentatricopeptide repeat superfamily protein (AHRD V3.3... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 169 207
IPR002885 Pentatricopeptide_repeat 271 318
IPR002885 Pentatricopeptide_repeat 50 72
IPR002885 Pentatricopeptide_repeat 78 108
IPR002885 Pentatricopeptide_repeat 346 370
IPR002885 Pentatricopeptide_repeat 138 163
No external refs found!