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  5. Sopen11g003180

Sopen11g003180


Description : ABC-2 type transporter


Gene families : OG_42_0000055 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000055_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen11g003180
Cluster HCCA clusters: Cluster_32

Target Alias Description ECC score Gene Family Method Actions
426328 No alias pleiotropic drug resistance 6 0.02 Orthogroups_2024-Update
441717 No alias pleiotropic drug resistance 12 0.02 Orthogroups_2024-Update
96729 No alias pleiotropic drug resistance 1 0.02 Orthogroups_2024-Update
A4A49_10346 No alias pleiotropic drug resistance protein 1 0.04 Orthogroups_2024-Update
A4A49_31699 No alias pleiotropic drug resistance protein 2 0.03 Orthogroups_2024-Update
A4A49_33262 No alias abc transporter g family member 32 0.04 Orthogroups_2024-Update
At1g15520 No alias ABC transporter G family member 40... 0.03 Orthogroups_2024-Update
At3g53480 No alias ABC transporter G family member 37... 0.04 Orthogroups_2024-Update
Brara.A03065.1 No alias subfamily ABCG transporter 0.02 Orthogroups_2024-Update
GRMZM2G451792 No alias pleiotropic drug resistance 7 0.02 Orthogroups_2024-Update
Glyma.03G192700 No alias pleiotropic drug resistance 11 0.02 Orthogroups_2024-Update
Glyma.15G019200 No alias ABC-2 and Plant PDR ABC-type transporter family protein 0.02 Orthogroups_2024-Update
Kfl00616_0050 kfl00616_0050_v1.1 (at1g59870 : 1348.0) ATP binding cassette transporter.... 0.02 Orthogroups_2024-Update
LOC_Os02g32690 No alias pleiotropic drug resistance protein 15, putative, expressed 0.02 Orthogroups_2024-Update
PSME_00001762-RA No alias (q5z9s8|pdr12_orysa : 1873.0) Pleiotropic drug... 0.02 Orthogroups_2024-Update
PSME_00005403-RA No alias (q8gu88|pdr7_orysa : 1833.0) Putative pleiotropic drug... 0.03 Orthogroups_2024-Update
PSME_00012870-RA No alias (q76cu2|pdr1_tobac : 1718.0) Pleiotropic drug resistance... 0.03 Orthogroups_2024-Update
PSME_00014724-RA No alias (q76cu2|pdr1_tobac : 1860.0) Pleiotropic drug resistance... 0.03 Orthogroups_2024-Update
PSME_00015395-RA No alias (q76cu2|pdr1_tobac : 1904.0) Pleiotropic drug resistance... 0.03 Orthogroups_2024-Update
Seita.2G179600.1 No alias subfamily ABCG transporter 0.02 Orthogroups_2024-Update
Seita.9G187800.1 No alias subfamily ABCG transporter 0.02 Orthogroups_2024-Update
Sobic.003G216232.1 No alias subfamily ABCG transporter 0.03 Orthogroups_2024-Update
Sobic.007G182300.2 No alias subfamily ABCG transporter 0.03 Orthogroups_2024-Update
Solyc02g081870 No alias Pleiotropic drug resistance ABC transporter (AHRD V3.3... 0.03 Orthogroups_2024-Update
Solyc05g053610 No alias Pleiotropic drug resistance ABC transporter (AHRD V3.3... 0.02 Orthogroups_2024-Update
Solyc09g091670 No alias Pleiotropic drug resistance ABC transporter (AHRD V3.3... 0.02 Orthogroups_2024-Update
Sopen05g032120 No alias ABC-2 type transporter 0.07 Orthogroups_2024-Update
Sopen05g032130 No alias ABC-2 type transporter 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA InterProScan predictions
CC GO:0016020 membrane IEA InterProScan predictions
MF GO:0016887 ATPase activity IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR029481 ABC_trans_N 116 167
IPR003439 ABC_transporter-like 850 1002
IPR003439 ABC_transporter-like 192 374
IPR013525 ABC_2_trans 594 715
IPR013525 ABC_2_trans 1147 1359
IPR013581 PDR_assoc 720 786
No external refs found!