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  5. A4A49_23060

A4A49_23060


Description : germacrene c synthase


Gene families : OG_42_0000137 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000137_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Nicotiana release: A4A49_23060
Cluster HCCA clusters: Cluster_28

Target Alias Description ECC score Gene Family Method Actions
A4A49_06164 No alias germacrene c synthase 0.04 Orthogroups_2024-Update
At4g20200 No alias Putative terpenoid synthase 7... 0.03 Orthogroups_2024-Update
Bradi4g04965 No alias Terpenoid cyclases/Protein prenyltransferases superfamily protein 0.02 Orthogroups_2024-Update
Glyma.12G138100 No alias terpene synthase 21 0.02 Orthogroups_2024-Update
LOC_Os04g27670 No alias terpene synthase family, metal binding domain containing... 0.03 Orthogroups_2024-Update
LOC_Os07g11790 No alias terpene synthase, putative, expressed 0.03 Orthogroups_2024-Update
Potri.T000400 No alias terpene synthase 21 0.03 Orthogroups_2024-Update
Seita.2G328900.1 No alias EC_4.2 carbon-oxygen lyase 0.02 Orthogroups_2024-Update
Seita.6G048400.1 No alias EC_4.2 carbon-oxygen lyase &... 0.03 Orthogroups_2024-Update
Seita.6G048900.1 No alias EC_4.2 carbon-oxygen lyase &... 0.01 Orthogroups_2024-Update
Seita.6G066400.1 No alias EC_4.2 carbon-oxygen lyase &... 0.03 Orthogroups_2024-Update
Seita.8G192000.1 No alias EC_4.2 carbon-oxygen lyase &... 0.03 Orthogroups_2024-Update
Sobic.002G065500.2 No alias EC_4.2 carbon-oxygen lyase 0.02 Orthogroups_2024-Update
Sobic.007G133900.1 No alias EC_4.2 carbon-oxygen lyase &... 0.03 Orthogroups_2024-Update
Solyc01g101190 No alias Alpha-humulene/(-)-(E)-beta-caryophyllene synthase (AHRD... 0.03 Orthogroups_2024-Update
Solyc07g052120 No alias Sesquiterpene synthase (AHRD V3.3 *-* G8H5N2_SOLHA) 0.03 Orthogroups_2024-Update
Solyc12g006570 No alias Sesquiterpene synthase (AHRD V3.3 *** G5CV52_SOLLC) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEA InterProScan predictions
MF GO:0010333 terpene synthase activity IEA InterProScan predictions
MF GO:0016829 lyase activity IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001906 Terpene_synth_N 78 254
IPR005630 Terpene_synthase_metal-bd 287 554
No external refs found!