Sopen11g004270

Description : Pumilio-family RNA binding repeat

Gene families : OG_42_0001049 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001049_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Sopen11g004270
Cluster	HCCA clusters: Cluster_134

Target	Alias	Description	ECC score	Gene Family Method	Actions
LOC_Os01g74030	No alias	pumilio-family RNA binding protein, putative, expressed	0.02	Orthogroups_2024-Update
Seita.1G368200.1	No alias	Unknown function	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR001313	Pumilio_RNA-bd_rpt	576	608
IPR001313	Pumilio_RNA-bd_rpt	683	715
IPR001313	Pumilio_RNA-bd_rpt	718	751
IPR001313	Pumilio_RNA-bd_rpt	792	824
IPR001313	Pumilio_RNA-bd_rpt	841	866
IPR001313	Pumilio_RNA-bd_rpt	762	788
IPR001313	Pumilio_RNA-bd_rpt	647	679
IPR001313	Pumilio_RNA-bd_rpt	610	642
IPR012940	NABP	455	566

External Links

No external refs found!