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  5. Sopen11g004310

Sopen11g004310


Description : Ribonuclease III domain


Gene families : OG_42_0000292 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000292_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen11g004310
Cluster HCCA clusters: Cluster_40

Target Alias Description ECC score Gene Family Method Actions
A4A49_29068 No alias ribonuclease 3-like protein 2 0.02 Orthogroups_2024-Update
Brara.E02164.1 No alias ribonuclease *(RTL2) 0.02 Orthogroups_2024-Update
Cre07.g345900 No alias dicer-like 1 0.01 Orthogroups_2024-Update
Kfl00384_0060 kfl00384_0060_v1.1 (at1g01040 : 265.0) Encodes a Dicer homolog. Dicer is a... 0.01 Orthogroups_2024-Update
Potri.002G226700 No alias RNAse II-like 1 0.03 Orthogroups_2024-Update
Solyc11g008530 No alias Dicer-like 2d 0.09 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
MF GO:0004525 ribonuclease III activity IEA InterProScan predictions
MF GO:0005515 protein binding IEA InterProScan predictions
MF GO:0005524 ATP binding IEA InterProScan predictions
BP GO:0006396 RNA processing IEA InterProScan predictions
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 121 287
IPR000999 RNase_III_dom 1290 1401
IPR000999 RNase_III_dom 1100 1218
IPR005034 Dicer_dimerisation_dom 657 738
IPR003100 PAZ_dom 931 1057
IPR001650 Helicase_C 469 587
No external refs found!