1. Home
  2. Species
  3. Solanum pennellii
  4. Sequence
  5. Sopen11g004680

Sopen11g004680


Description : Zinc finger C-x8-C-x5-C-x3-H type (and similar)


Gene families : OG_42_0000464 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000464_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen11g004680
Cluster HCCA clusters: Cluster_92

Target Alias Description ECC score Gene Family Method Actions
45667 No alias zinc finger nuclease 3 0.03 Orthogroups_2024-Update
A4A49_10593 No alias zinc finger ccch domain-containing protein zfn-like protein 0.06 Orthogroups_2024-Update
At5g16540 No alias Zinc finger CCCH domain-containing protein 57... 0.03 Orthogroups_2024-Update
Bradi4g08050 No alias zinc finger protein 1 0.05 Orthogroups_2024-Update
Brara.C03010.1 No alias regulatory protein of RNA homeostasis 0.04 Orthogroups_2024-Update
Brara.E03281.1 No alias regulatory protein of RNA homeostasis 0.04 Orthogroups_2024-Update
GRMZM2G087032 No alias zinc finger protein 1 0.02 Orthogroups_2024-Update
GRMZM2G107491 No alias zinc finger protein 1 0.03 Orthogroups_2024-Update
GRMZM2G146514 No alias zinc finger protein 1 0.02 Orthogroups_2024-Update
GRMZM2G475017 No alias Zinc finger C-x8-C-x5-C-x3-H type family protein 0.03 Orthogroups_2024-Update
Glyma.07G250000 No alias Zinc finger C-x8-C-x5-C-x3-H type family protein 0.05 Orthogroups_2024-Update
Glyma.09G251200 No alias zinc finger protein 1 0.04 Orthogroups_2024-Update
Glyma.10G020700 No alias Zinc finger C-x8-C-x5-C-x3-H type family protein 0.03 Orthogroups_2024-Update
Glyma.10G170800 No alias zinc finger protein 1 0.09 Orthogroups_2024-Update
Glyma.15G095500 No alias Zinc finger C-x8-C-x5-C-x3-H type family protein 0.04 Orthogroups_2024-Update
Glyma.20G219100 No alias zinc finger protein 1 0.03 Orthogroups_2024-Update
LOC_Os01g15460 No alias zinc finger C-x8-C-x5-C-x3-H type family protein, expressed 0.02 Orthogroups_2024-Update
LOC_Os01g68860 No alias zinc finger C-x8-C-x5-C-x3-H type family protein, expressed 0.03 Orthogroups_2024-Update
LOC_Os12g21700 No alias zinc finger C-x8-C-x5-C-x3-H type family protein, expressed 0.03 Orthogroups_2024-Update
Mp2g10620.1 No alias C3H zinc finger transcription factor 0.03 Orthogroups_2024-Update
PSME_00001974-RA No alias (q9swf9|zfnl_pea : 135.0) Zinc finger CCCH... 0.02 Orthogroups_2024-Update
Potri.019G053200 No alias zinc finger protein 1 0.06 Orthogroups_2024-Update
Pp1s6_324V6 No alias nucleic acid binding 0.02 Orthogroups_2024-Update
Seita.5G427800.1 No alias regulatory protein of RNA homeostasis 0.03 Orthogroups_2024-Update
Seita.8G116700.1 No alias regulatory protein of RNA homeostasis 0.03 Orthogroups_2024-Update
Sobic.005G111700.1 No alias regulatory protein of RNA homeostasis 0.03 Orthogroups_2024-Update
Solyc11g008900 No alias Zinc finger transcription factor 65 0.18 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0046872 metal ion binding IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR000571 Znf_CCCH 140 164
IPR000571 Znf_CCCH 94 118
IPR000571 Znf_CCCH 340 365
IPR000571 Znf_CCCH 294 319
IPR000571 Znf_CCCH 48 73
No external refs found!