A4A49_25976

Description : putative pectate lyase p59

Gene families : OG_42_0000086 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000086_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Nicotiana release: A4A49_25976
Cluster	HCCA clusters: Cluster_12

Target	Alias	Description	ECC score	Gene Family Method
A4A49_18000	No alias	putative pectate lyase 10	0.03	Orthogroups_2024-Update
A4A49_40716	No alias	putative pectate lyase 16	0.04	Orthogroups_2024-Update
Brara.B00588.1	No alias	pectate lyase & EC_4.2 carbon-oxygen lyase	0.03	Orthogroups_2024-Update
Glyma.17G011200	No alias	Pectin lyase-like superfamily protein	0.03	Orthogroups_2024-Update
PSME_00019824-RA	No alias	(at1g67750 : 587.0) Pectate lyase family protein;...	0.02	Orthogroups_2024-Update
Potri.017G078400	No alias	Pectate lyase family protein	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0016829	lyase activity	None	Extended
MF	GO:0016835	carbon-oxygen lyase activity	None	Extended
MF	GO:0016837	carbon-oxygen lyase activity, acting on polysaccharides	None	Extended
MF	GO:0030570	pectate lyase activity	IEA	InterProScan predictions

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR002022	Pec_lyase	182	362
IPR007524	Pec_lyase_N	27	85

External Links

No external refs found!