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  5. Sopen11g005040

Sopen11g005040


Description : PPR repeat


Gene families : OG_42_0009668 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0009668_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen11g005040
Cluster HCCA clusters: Cluster_162

Target Alias Description ECC score Gene Family Method Actions
Potri.004G054000 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 Orthogroups_2024-Update
Seita.9G392300.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.005G017100.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Solyc11g010260 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 218 246
IPR002885 Pentatricopeptide_repeat 54 83
IPR002885 Pentatricopeptide_repeat 190 217
IPR002885 Pentatricopeptide_repeat 254 282
IPR002885 Pentatricopeptide_repeat 113 161
No external refs found!