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  5. A4A49_26358

A4A49_26358


Description : putative pectate lyase p18


Gene families : OG_42_0000086 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000086_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Nicotiana release: A4A49_26358
Cluster HCCA clusters: Cluster_98

Target Alias Description ECC score Gene Family Method Actions
A4A49_31246 No alias putative pectate lyase 12 0.03 Orthogroups_2024-Update
A4A49_35525 No alias putative pectate lyase 16 0.05 Orthogroups_2024-Update
A4A49_40716 No alias putative pectate lyase 16 0.02 Orthogroups_2024-Update
At1g04680 No alias Pectate lyase [Source:UniProtKB/TrEMBL;Acc:A0A178W464] 0.04 Orthogroups_2024-Update
At3g07010 No alias Probable pectate lyase 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9M8Z8] 0.03 Orthogroups_2024-Update
At5g09280 No alias Pectate lyase [Source:UniProtKB/TrEMBL;Acc:Q9FY87] 0.03 Orthogroups_2024-Update
Brara.G02558.1 No alias pectate lyase & EC_4.2 carbon-oxygen lyase 0.05 Orthogroups_2024-Update
Brara.I00410.1 No alias pectate lyase & EC_4.2 carbon-oxygen lyase 0.04 Orthogroups_2024-Update
Glyma.04G173900 No alias Pectate lyase family protein 0.03 Orthogroups_2024-Update
Glyma.13G145900 No alias Pectin lyase-like superfamily protein 0.06 Orthogroups_2024-Update
HORVU3Hr1G075970.2 No alias pectate lyase & EC_4.2 carbon-oxygen lyase 0.03 Orthogroups_2024-Update
MA_203992g0010 No alias (at4g24780 : 544.0) Pectin lyase-like superfamily... 0.02 Orthogroups_2024-Update
PSME_00036578-RA No alias (at5g48900 : 578.0) Pectin lyase-like superfamily... 0.04 Orthogroups_2024-Update
Potri.001G052300 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
Potri.008G182200 No alias Pectate lyase family protein 0.04 Orthogroups_2024-Update
Pp1s206_50V6 No alias pectate lyase 0.02 Orthogroups_2024-Update
Pp1s84_82V6 No alias pectate lyase 0.04 Orthogroups_2024-Update
Solyc09g061890 No alias Pectate lyase (AHRD V3.3 *** M1BAL5_SOLTU) 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002022 Pec_lyase 136 321
No external refs found!