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  5. A4A49_26569

A4A49_26569


Description : putative cyclic nucleotide-gated ion channel 16


Gene families : OG_42_0000108 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000108_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Nicotiana release: A4A49_26569
Cluster HCCA clusters: Cluster_6

Target Alias Description ECC score Gene Family Method Actions
A4A49_17367 No alias cyclic nucleotide-gated ion channel 1 0.03 Orthogroups_2024-Update
Bradi1g46970 No alias cyclic nucleotide-gated channel 17 0.01 Orthogroups_2024-Update
Brara.D01484.1 No alias cyclic nucleotide-gated cation channel *(CNGC) 0.03 Orthogroups_2024-Update
Glyma.04G237400 No alias cyclic nucleotide gated channel 1 0.02 Orthogroups_2024-Update
Glyma.19G255500 No alias cyclic nucleotide gated channel 1 0.03 Orthogroups_2024-Update
LOC_Os02g41710 No alias cyclic nucleotide-gated ion channel, putative, expressed 0.02 Orthogroups_2024-Update
PSME_00005940-RA No alias (at5g15410 : 820.0) 'defense, no death' gene (DND1)... 0.02 Orthogroups_2024-Update
Potri.001G043900 No alias cyclic nucleotide gated channel 8 0.03 Orthogroups_2024-Update
Pp1s211_70V6 No alias T3B23.7; cyclic nucleotide-regulated ion channel,... 0.02 Orthogroups_2024-Update
Solyc01g095770 No alias Cyclic nucleotide-gated channel (AHRD V3.3 *** A0A0K9PRG4_ZOSMR) 0.02 Orthogroups_2024-Update
Sopen03g035780 No alias Ion transport protein 0.02 Orthogroups_2024-Update
Sopen11g028290 No alias Ion transport protein 0.02 Orthogroups_2024-Update
evm.model.tig00021244.33 No alias (at4g30560 : 102.0) member of Cyclic nucleotide gated... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005216 ion channel activity IEA InterProScan predictions
BP GO:0006811 ion transport IEA InterProScan predictions
CC GO:0016020 membrane IEA InterProScan predictions
BP GO:0055085 transmembrane transport IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR005821 Ion_trans_dom 39 360
IPR000595 cNMP-bd_dom 456 543
No external refs found!