Sopen11g005690

Description : PAXNEB protein

Gene families : OG_42_0006158 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0006158_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Sopen11g005690
Cluster	HCCA clusters: Cluster_107

Target	Alias	Description	ECC score	Gene Family Method
Brara.E02951.1	No alias	component *(ELP4) of ELONGATOR transcription elongation complex	0.03	Orthogroups_2024-Update
Potri.010G189500	No alias	Paxneb protein-related	0.02	Orthogroups_2024-Update
Seita.9G073800.1	No alias	component *(ELP4) of ELONGATOR transcription elongation complex	0.03	Orthogroups_2024-Update
Solyc11g010950	No alias	Elongator complex 4 (AHRD V3.3 *** A0A0B0P040_GOSAR)	0.04	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
BP	GO:0002097	tRNA wobble base modification	None	Extended
BP	GO:0002098	tRNA wobble uridine modification	IEA	InterProScan predictions
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006399	tRNA metabolic process	None	Extended
BP	GO:0006400	tRNA modification	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008033	tRNA processing	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009451	RNA modification	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
CC	GO:0033588	Elongator holoenzyme complex	IEA	InterProScan predictions
BP	GO:0034470	ncRNA processing	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR008728	Elongator_complex_protein_4	20	361

External Links

No external refs found!

Sopen11g005690

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation