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  5. A4A49_27413

A4A49_27413


Description : ap2erf and b3 domain-containing transcription factor rav1


Gene families : OG_42_0000305 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000305_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Nicotiana release: A4A49_27413
Cluster HCCA clusters: Cluster_121

Target Alias Description ECC score Gene Family Method Actions
At1g68840 No alias TEM2 [Source:UniProtKB/TrEMBL;Acc:A0A178WNP0] 0.04 Orthogroups_2024-Update
At3g25730 No alias AP2/ERF and B3 domain-containing transcription factor... 0.03 Orthogroups_2024-Update
Brara.D02192.1 No alias RAV/NGATHA-type transcription factor 0.03 Orthogroups_2024-Update
Brara.H02115.1 No alias RAV/NGATHA-type transcription factor & AP2-RAV-type... 0.03 Orthogroups_2024-Update
Brara.H03121.1 No alias RAV/NGATHA-type transcription factor 0.06 Orthogroups_2024-Update
Brara.I03099.1 No alias RAV/NGATHA-type transcription factor & AP2-RAV-type... 0.04 Orthogroups_2024-Update
GRMZM2G159592 No alias related to ABI3/VP1 1 0.03 Orthogroups_2024-Update
Glyma.01G087500 No alias AP2/B3 transcription factor family protein 0.03 Orthogroups_2024-Update
Glyma.02G099500 No alias AP2/B3 transcription factor family protein 0.03 Orthogroups_2024-Update
HORVU3Hr1G010100.2 No alias RAV/NGATHA-type transcription factor & AP2-RAV-type... 0.03 Orthogroups_2024-Update
Kfl00094_0070 kfl00094_0070_v1.1 (at1g13260 : 233.0) Encodes an AP2/B3 domain... 0.02 Orthogroups_2024-Update
LOC_Os01g04750 No alias B3 DNA binding domain containing protein, expressed 0.02 Orthogroups_2024-Update
LOC_Os01g04800 No alias B3 DNA binding domain containing protein, expressed 0.03 Orthogroups_2024-Update
MA_10428163g0010 No alias (at1g13260 : 267.0) Encodes an AP2/B3 domain... 0.03 Orthogroups_2024-Update
MA_178646g0010 No alias (at1g68840 : 271.0) Rav2 is part of a complex that has... 0.03 Orthogroups_2024-Update
PSME_00035556-RA No alias (at3g25730 : 293.0) ethylene response DNA binding factor... 0.03 Orthogroups_2024-Update
Potri.016G074500 No alias AP2/B3-like transcriptional factor family protein 0.03 Orthogroups_2024-Update
Seita.6G064600.1 No alias RAV/NGATHA-type transcription factor 0.03 Orthogroups_2024-Update
Sobic.001G528200.2 No alias RAV/NGATHA-type transcription factor 0.03 Orthogroups_2024-Update
Sobic.003G265200.1 No alias RAV/NGATHA-type transcription factor & AP2-RAV-type... 0.03 Orthogroups_2024-Update
Sopen04g002090 No alias B3 DNA binding domain 0.02 Orthogroups_2024-Update
Sopen05g005620 No alias B3 DNA binding domain 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA InterProScan predictions
MF GO:0003700 DNA-binding transcription factor activity IEA InterProScan predictions
BP GO:0006355 regulation of transcription, DNA-templated IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR003340 B3_DNA-bd 198 296
IPR001471 AP2/ERF_dom 63 111
No external refs found!