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  5. A4A49_28810

A4A49_28810


Description : polygalacturonase


Gene families : OG_42_0000512 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000512_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Nicotiana release: A4A49_28810
Cluster HCCA clusters: Cluster_4

Target Alias Description ECC score Gene Family Method Actions
A4A49_10908 No alias polygalacturonase 0.04 Orthogroups_2024-Update
GRMZM2G151755 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.04G157500 No alias Pectin lyase-like superfamily protein 0.05 Orthogroups_2024-Update
Glyma.04G157600 No alias Pectin lyase-like superfamily protein 0.04 Orthogroups_2024-Update
Glyma.04G157700 No alias Pectin lyase-like superfamily protein 0.05 Orthogroups_2024-Update
Solyc10g047590 No alias Pectin lyase-like superfamily protein, putative (AHRD... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEA InterProScan predictions
BP GO:0005975 carbohydrate metabolic process IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR000743 Glyco_hydro_28 57 385
No external refs found!