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  5. Sopen11g006790

Sopen11g006790


Description : WD domain, G-beta repeat


Gene families : OG_42_0000717 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000717_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen11g006790
Cluster HCCA clusters: Cluster_404

Target Alias Description ECC score Gene Family Method Actions
141846 No alias Transducin/WD40 repeat-like superfamily protein 0.02 Orthogroups_2024-Update
A4A49_35805 No alias e3 ubiquitin-protein ligase cop1 0.02 Orthogroups_2024-Update
At2g32950 No alias FUS1 [Source:UniProtKB/TrEMBL;Acc:A0A178VXE2] 0.03 Orthogroups_2024-Update
At2g46340 No alias SPA1 [Source:UniProtKB/TrEMBL;Acc:A0A178VSM9] 0.06 Orthogroups_2024-Update
Brara.A03144.1 No alias regulatory component *(SPA) of COP1-SPA light signal... 0.04 Orthogroups_2024-Update
Brara.E02608.1 No alias regulatory component *(SPA) of COP1-SPA light signal... 0.03 Orthogroups_2024-Update
Glyma.01G224200 No alias SPA1-related 2 0.02 Orthogroups_2024-Update
Glyma.02G267800 No alias Transducin/WD40 repeat-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.14G049700 No alias Transducin/WD40 repeat-like superfamily protein 0.03 Orthogroups_2024-Update
Kfl00002_0060 kfl00002_0060_v1.1 (at2g32950 : 704.0) Represses photomorphogenesis and... 0.02 Orthogroups_2024-Update
LOC_Os02g53140 No alias COP1, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os05g49590 No alias suppressor of phythchrome A, putative, expressed 0.02 Orthogroups_2024-Update
Pp1s25_325V6 No alias ubiquitin ligase protein 0.02 Orthogroups_2024-Update
Pp1s81_234V6 No alias ubiquitin ligase protein 0.02 Orthogroups_2024-Update
Seita.5G302800.1 No alias component *(SPA) of substrate adaptor module of... 0.04 Orthogroups_2024-Update
Sobic.004G312600.1 No alias component *(COP1) of COP1-SPA light signal transduction... 0.03 Orthogroups_2024-Update
Sobic.009G238000.1 No alias regulatory component *(SPA) of COP1-SPA light signal... 0.03 Orthogroups_2024-Update
evm.model.contig_3435.19 No alias (at2g32950 : 368.0) Represses photomorphogenesis and... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001680 WD40_repeat 540 576
IPR001680 WD40_repeat 454 491
No external refs found!