1. Home
  2. Species
  3. Solanum pennellii
  4. Sequence
  5. Sopen11g007400

Sopen11g007400


Description : PPR repeat family


Gene families : OG_42_0001517 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001517_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen11g007400
Cluster HCCA clusters: Cluster_125

Target Alias Description ECC score Gene Family Method Actions
At5g46580 No alias Pentatricopeptide repeat-containing protein At5g46580,... 0.03 Orthogroups_2024-Update
Brara.F03614.1 No alias endoribonuclease *(SOT1) 0.03 Orthogroups_2024-Update
GRMZM2G017593 No alias pentatricopeptide (PPR) repeat-containing protein 0.06 Orthogroups_2024-Update
GRMZM2G128665 No alias pentatricopeptide (PPR) repeat-containing protein 0.02 Orthogroups_2024-Update
Glyma.09G013400 No alias pentatricopeptide (PPR) repeat-containing protein 0.02 Orthogroups_2024-Update
Glyma.15G118100 No alias pentatricopeptide (PPR) repeat-containing protein 0.02 Orthogroups_2024-Update
Glyma.15G118300 No alias pentatricopeptide (PPR) repeat-containing protein 0.02 Orthogroups_2024-Update
HORVU5Hr1G124070.4 No alias endoribonuclease *(SOT1) 0.03 Orthogroups_2024-Update
MA_283144g0010 No alias (at5g46580 : 637.0) pentatricopeptide (PPR)... 0.02 Orthogroups_2024-Update
Potri.003G089600 No alias pentatricopeptide (PPR) repeat-containing protein 0.02 Orthogroups_2024-Update
Pp1s220_57V6 No alias F10E10.5; pentatricopeptide (PPR) repeat-containing... 0.05 Orthogroups_2024-Update
Pp1s258_9V6 No alias F10E10.5; pentatricopeptide (PPR) repeat-containing... 0.06 Orthogroups_2024-Update
Seita.9G489900.1 No alias plastidial RNA processing factor *(SVR7) 0.02 Orthogroups_2024-Update
Sobic.001G455500.1 No alias plastidial RNA processing factor *(SVR7) 0.05 Orthogroups_2024-Update
Solyc08g077120 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.04 Orthogroups_2024-Update
Solyc08g077140 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.03 Orthogroups_2024-Update
Solyc11g012670 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.1 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR033443 PPR_long 352 495
IPR002885 Pentatricopeptide_repeat 264 309
IPR002885 Pentatricopeptide_repeat 159 203
IPR002885 Pentatricopeptide_repeat 225 255
No external refs found!