Sopen11g008410

Description : SNF5 / SMARCB1 / INI1

Gene families : OG_42_0005518 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0005518_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Sopen11g008410
Cluster	HCCA clusters: Cluster_149

Target	Alias	Description	ECC score	Gene Family Method
Cre14.g619613	No alias	transcription regulatory protein SNF5, putative (BSH)	0.02	Orthogroups_2024-Update
HORVU1Hr1G017710.2	No alias	SMARCB component *(BSH) of chromatin remodeling complex	0.02	Orthogroups_2024-Update
evm.model.contig_2279.10	No alias	(at3g17590 : 85.9) Encodes the Arabidopsis homologue of...	0.02	Orthogroups_2024-Update
evm.model.tig00000865.2	No alias	no hits & (original description: no original description)	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
CC	GO:0000228	nuclear chromosome	IEA	InterProScan predictions
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005694	chromosome	None	Extended
BP	GO:0006325	chromatin organization	None	Extended
BP	GO:0006338	chromatin remodeling	IEA	InterProScan predictions
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
CC	GO:0044422	organelle part	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044428	nuclear part	None	Extended
CC	GO:0044446	intracellular organelle part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR006939	SNF5	101	241
IPR006939	SNF5	21	93

External Links

No external refs found!