1. Home
  2. Species
  3. Nicotiana attenuata
  4. Sequence
  5. A4A49_32326

A4A49_32326


Description : putative pectate lyase 3


Gene families : OG_42_0000086 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000086_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Nicotiana release: A4A49_32326
Cluster HCCA clusters: Cluster_79

Target Alias Description ECC score Gene Family Method Actions
Brara.K01484.1 No alias pectate lyase & EC_4.2 carbon-oxygen lyase 0.04 Orthogroups_2024-Update
Glyma.02G020600 No alias Pectate lyase family protein 0.04 Orthogroups_2024-Update
PSME_00005108-RA No alias (at5g63180 : 441.0) Pectin lyase-like superfamily... 0.02 Orthogroups_2024-Update
PSME_00023843-RA No alias (at4g13710 : 610.0) Pectin lyase-like superfamily... 0.04 Orthogroups_2024-Update
PSME_00046555-RA No alias (at4g24780 : 518.0) Pectin lyase-like superfamily... 0.05 Orthogroups_2024-Update
Potri.001G007400 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
Pp1s355_16V6 No alias pectate lyase 0.03 Orthogroups_2024-Update
Solyc02g093580 No alias Tomato 9612 mRNA 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0030570 pectate lyase activity IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002022 Pec_lyase 179 361
IPR007524 Pec_lyase_N 28 78
No external refs found!