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  5. Sopen11g009630

Sopen11g009630


Description : Integrase core domain


Gene families : OG_42_0000004 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen11g009630
Cluster HCCA clusters: Cluster_188

Target Alias Description ECC score Gene Family Method Actions
Cre08.g358542 No alias Function unknown 0.02 Orthogroups_2024-Update
LOC_Os03g61190 No alias retrotransposon protein, putative, unclassified, expressed 0.02 Orthogroups_2024-Update
LOC_Os04g51430 No alias retrotransposon protein, putative, unclassified, expressed 0.02 Orthogroups_2024-Update
LOC_Os05g05880 No alias retrotransposon protein, putative, unclassified, expressed 0.02 Orthogroups_2024-Update
LOC_Os06g07400 No alias retrotransposon protein, putative, unclassified, expressed 0.02 Orthogroups_2024-Update
LOC_Os08g13080 No alias retrotransposon protein, putative, unclassified, expressed 0.02 Orthogroups_2024-Update
LOC_Os08g26650 No alias retrotransposon, putative, centromere-specific, expressed 0.02 Orthogroups_2024-Update
LOC_Os09g26430 No alias retrotransposon protein, putative, unclassified, expressed 0.03 Orthogroups_2024-Update
LOC_Os10g24400 No alias retrotransposon protein, putative, unclassified, expressed 0.02 Orthogroups_2024-Update
Mp2g03770.1 No alias no hits & (original description: none) 0.02 Orthogroups_2024-Update
Solyc04g040100 No alias No description available 0.02 Orthogroups_2024-Update
Solyc10g012010 No alias No description available 0.02 Orthogroups_2024-Update
Solyc11g063750 No alias No description available 0.02 Orthogroups_2024-Update
Sopen01g011220 No alias Retroviral aspartyl protease 0.02 Orthogroups_2024-Update
Sopen02g006530 No alias Integrase core domain 0.02 Orthogroups_2024-Update
Sopen02g012310 No alias Retroviral aspartyl protease 0.03 Orthogroups_2024-Update
Sopen04g009770 No alias Integrase core domain 0.03 Orthogroups_2024-Update
Sopen05g010930 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.04 Orthogroups_2024-Update
Sopen06g008750 No alias Retroviral aspartyl protease 0.03 Orthogroups_2024-Update
Sopen06g011960 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.02 Orthogroups_2024-Update
Sopen07g012430 No alias Apocytochrome F, C-terminal 0.04 Orthogroups_2024-Update
Sopen10g018950 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.02 Orthogroups_2024-Update
Sopen10g028470 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen11g009960 No alias Retrotransposon gag protein 0.04 Orthogroups_2024-Update
Sopen11g019880 No alias Retroviral aspartyl protease 0.05 Orthogroups_2024-Update
Sopen11g022280 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen11g023250 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
evm.model.tig00021758.17 No alias (p31843|rrpo_oenbe : 98.2) RNA-directed DNA polymerase... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0015074 DNA integration IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR005162 Retrotrans_gag_dom 393 483
IPR000477 RT_dom 1249 1411
IPR001584 Integrase_cat-core 1787 1895
No external refs found!